Publications

Dolan PC, Denver DR. (2008) TileQC: a system for tile-based quality control of Solexa data. BMC Bioinformatics 9, 250.

Howe DK, Denver DR. (2008) Muller's Ratchet and compensatory mutation in Caenorhabditis briggsae mitochondrial genome evolution. BMC Evol Biol 8, 62.

Vergin KL, Tripp HJ, Wilhelm LJ, Denver DR, Rappe MS, Giovannoni SJ. (2007) High intraspecific recombination rate in a native population of Candidatus pelagibacter ubique (SAR11). Environ Microbiol 9, 2430-40.

Baer CF, Miyamoto MM, Denver DR. (2007) Mutation rate variation in multicellular eukaryotes: causes and consequences. Nat Rev Genet 8, 619-31.

Denver DR, Feinberg S, Steding C, Durbin M, Lynch M. (2006) The relative roles of three DNA repair pathways in preventing Caenorhabditis elegans mutation accumulation. Genetics 174, 57-65.

Denver DR, Morris K, Streelman JT, Kim SK, Lynch M, Thomas WK. (2005) The transcriptional consequences of mutation and natural selection in Caenorhabditis elegans. Nat Genet 37, 544-8.

Denver DR, Feinberg S, Estes S, Thomas WK, Lynch M. (2005) Mutation rates, spectra and hotspots in mismatch repair-deficient Caenorhabditis elegans. Genetics 170, 107-13.

Denver DR, Morris K, Lynch M, Thomas WK. (2004) High mutation rate and predominance of insertions in the Caenorhabditis elegans nuclear genome. Nature 430, 679-82.

Denver DR, Morris K, Kewalramani A, Harris KE, Chow A, Estes S, Lynch M, Thomas WK. (2004) Abundance, distribution, and mutation rates of homopolymeric nucleotide runs in the genome of Caenorhabditis elegans. J Mol Evol 58, 584-95.

Estes S, Phillips PC, Denver DR, Thomas WK, Lynch M. (2004) Mutation accumulation in populations of varying size: the distribution of mutational effects for fitness correlates in Caenorhab Genetics 166, 1269-79.

Denver DR, Swenson SL, Lynch M. (2003) An evolutionary analysis of the helix-hairpin-helix superfamily of DNA repair glycosylases. Mol Biol Evol 20, 1603-11.

Denver DR, Morris K, Thomas WK. (2003) Phylogenetics in Caenorhabditis elegans: an analysis of divergence and outcrossing. Mol Biol Evol 20, 393-400.

Denver DR, Morris K, Lynch M, Vassilieva LL, Thomas WK. (2000) High direct estimate of the mutation rate in the mitochondrial genome of Caenorhabditis elegans. Science 289, 2342-4.